VARIANT_TYPE	GENE	SOMATIC_STATUS_FUNCTIONAL_IMPACT	SV_PROTEIN_CHANGE	SV_CDS_CHANGE	SV_GENOME_POSITION	SV_PERCENT_READS	CNA_COPY_NUMBER	REARR_GENE1	REARR_GENE2	REARR_POS1	REARR_POS2	REARR_NUMBER_OF_READS
short-variant	MLL2	unknown	A2500T	7498G>A	chr12:49434055	50.25						
short-variant	GPR124	unknown	V647I	1939G>A	chr8:37693177	48.21						
short-variant	JAK1	unknown	G1097A	3290G>C	chr1:65301158	89.73
short-variant	MSH2	known	N412H 	1234A>C	chr2:47657038 	2.90
short-variant	BRCA2	known	splice site 8754+1G>A	8754+1G>A	chr13:32950929	66.1
short-variant	EGFR	known	E746_A750del	2235_2249delGGAATTAAGAGAAGC	chr7:55242464	24.12											
short-variant	EGFR	known	C797S	2389T>A	chr7:55249091	1.38						
copy-number-alteration	PAK3	unknown					0
copy-number-alteration	FANCG	known					0					
short-variant	GNAS	unknown	E52K	154G>A	chr20:57428474	31.24						
short-variant	RAD51B	unknown	T143I	428C>T	chr14:68331832	70.07						
short-variant	APC	unknown	S2797G	8389A>G	chr5:112179680	51.68						
short-variant	SPEN	unknown	K909R	2726A>G	chr1:16255461	25.28						
short-variant	TERT	unknown	promoter -124C>A	-124C>A	chr5:1295228	31.28						
short-variant	IDH2	unknown	M248T	743T>C	chr15:90630743	54												
short-variant	CARD11	unknown	R818Q	2453G>A	chr7:2959063	49.18						
short-variant	NFKBIA	unknown	T146I	437C>T	chr14:35872466	73.86						
copy-number-alteration	PARK2	known					0					
short-variant	TP53	known	R196*	586C>T	chr17:7578263	29.29										
short-variant	RB1	unknown	G38D	113G>A	chr13:48878161	40.19					
short-variant	PMS2	unknown	G207E	620G>A	chr7:6038824	50.16										
copy-number-alteration	TSC2	known					0					
copy-number-alteration	ZNF217	known					8					
copy-number-alteration	CCNE1	known					35					
rearrangement	TSC2	unknown						TSC2	TSC2	chr16:2122099-2122412	chr16:2129381-2129779	63
rearrangement	BRAF	known						BRAF	DENND2A	chr7:140495681-140495854	chr7:140275943-140276052	63